Hi, the tutorial used to have examples of
renku run papermill ..., but I can’t find them any more. I tried to use it as I noted down earlier, but I cannot see the lineage information of the output files. See e.g. here: Renku
I generated the file using the following command:
renku run papermill notebooks/GC_Fluxes_Computations_equations.ipynb \ notebooks/GC_Fluxes_Computations_equations.ran.ipynb -p output_path_var \ modules_exported/Mathematical_model_variable_definitions.py -p output_path_eq \ modules_exported/Mathematical_model_equations_definitions.py
The project you linked to is private, so I didn’t have permission to take a look.
Do you see the lineage with the commandline client? I.e. running
renku log modules_exported/Mathematical_model_variable_definitions.py (if
modules_exported/Mathematical_model_variable_definitions.py is an output).
Hi Ralf, sorry about this, I made it ‘internal’ now. Don’t want to make it public yet as I haven’t included any license information.
Here is what I got:
$ renku log modules_exported/Mathematical_model_variable_definitions.py
* d1aea19e notebooks/GC_Fluxes_Computations_equations.ran.ipynb
| * d1aea19e modules_exported/Mathematical_model_variable_definitions.py
| * d1aea19e modules_exported/Mathematical_model_equations_definitions.py
| * c3cef784 .renku/workflow/759a220028cc426ca49cf2a187b7ad23_papermill.yaml
* aca8c241 (latest -> 55460c5f) notebooks/GC_Fluxes_Computations_equations.ipynb
| (part of notebooks directory)
@ aca8c241 (latest -> 55460c5f) notebooks
I just checked the same project again (Renku), and now it works! The knowledge graph shows up nicely, and when clicking on the input or output filesl in the KG, I get a new view for that file: Renku
Awesome! The new version of renku made all the difference.
It would be nice if clicking on the renku run command would also show the full command.