Hi @lgatto I see that you switched to using the renkulab image called
renkulab-bioc:RELEASE_3_13-c1b18cb in your project. However this is not yet officially supported in renku - what you got there is just a development build that we used to test. Official images will not have a string of 7 random characters at the end but rather something human readable or a proper semver (i.e.
0.8.0). So the latest official build is
The problem we are having is coming mainly from the latest version of Rstudio (1.4.1717) which would enable you to use R version 4.1.0 and the latest version of bioconductor (3.13). However the latest release of Rstudio has some changes in how it handles the authentication that do not play well with our current setup and we therefore cannot yet use it with renku.
An interim solution for now would be to simply downgrade to
renku/renkulab-bioc:RELEASE_3_12-0.8.0 which has bioconductor 3.12 and R version 4.0 and will work without any problems with the Rstudio version we use in Renku.
Or if the only issue you have is some limited functionality in plotting in Rstudio but everything else is ok then I guess you can also stick with your current setup.
I will do a bit more digging of whether there have been any new developments in the issues we have encountered with the latest Rstudio version and let you know if there is a way forward. However it seems that this is not something we can resolve very quickly.