Sorry in advance if I have missed the obvious documentation page answering my question, as it seems pretty basic.
I have added a dataset that I would like to use in one of my environments. The is visible where I expect to see it, i.e. data/ms3/ MS3TMT10_01022016_32917-33481.mzML
, but that file only contains the references to the actual data:
$ cat data/ms3/MS3TMT10_01022016_32917-33481.mzML
version https://git-lfs.github.com/spec/v1
oid sha256:d9d65d06e7b118b0aa68511f90bb11d3d1c4f697c92047eca0f11b70a411e526
size 36091582
The Renku CLI metioned importing data, which is already the case for me:
renku dataset import https://renkulab.io/datasets/fd64bfb7-7446-4c2f-ae89-c73d9c7a022d
CHECKSUM NAME SIZE (MB) TYPE
---------------------------------------- ---------------------------------- ----------- ------
fa51bb1bccb29f60409e6c79bee3b48d58a3574c MS3TMT10_01022016_32917-33481.mzML 36.00 mzML
Warning: Do you wish to download this version? [y/N]: y
Error: Dataset exists: "ms3".
My question is - what now? How can I materialise the actual data file and make use of it?