# Renku run papermill

**URL:** https://renku.discourse.group/t/renku-run-papermill/493
**Category:** Renku (CLI)
**Created:** [23 November 2021 22:56 UTC](https://renku.discourse.group/t/renku-run-papermill/493 "2021-11-23T22:56:27Z")
**Posts on this page:** 4
**Page:** 1

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### Author: ![schymans](https://yyz2.discourse-cdn.com/free1/user_avatar/renku.discourse.group/schymans/32/77_2.png) [@schymans](https://renku.discourse.group/u/schymans)
#### Post date: [23 November 2021 22:56 UTC](https://renku.discourse.group/t/renku-run-papermill/493/1 "2021-11-23T22:56:27Z")

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Hi, the tutorial used to have examples of `renku run papermill ...`, but I can’t find them any more. I tried to use it as I noted down earlier, but I cannot see the lineage information of the output files. See e.g. here: [Renku](https://renkulab.io/projects/wave/li-6800/files/blob/modules_exported/Mathematical_model_variable_definitions.py)

I generated the file using the following command: `renku run papermill notebooks/GC_Fluxes_Computations_equations.ipynb \ notebooks/GC_Fluxes_Computations_equations.ran.ipynb -p output_path_var \ modules_exported/Mathematical_model_variable_definitions.py -p output_path_eq \ modules_exported/Mathematical_model_equations_definitions.py`

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### Author: ![ralf.grubenmann](https://yyz2.discourse-cdn.com/free1/user_avatar/renku.discourse.group/ralf.grubenmann/32/78_2.png) [@ralf.grubenmann](https://renku.discourse.group/u/ralf.grubenmann)
#### Post date: [24 November 2021 07:44 UTC](https://renku.discourse.group/t/renku-run-papermill/493/2 "2021-11-24T07:44:15Z")

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The project you linked to is private, so I didn’t have permission to take a look.

Do you see the lineage with the commandline client? I.e. running `renku log modules_exported/Mathematical_model_variable_definitions.py` (if `modules_exported/Mathematical_model_variable_definitions.py` is an output).

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### Author: ![schymans](https://yyz2.discourse-cdn.com/free1/user_avatar/renku.discourse.group/schymans/32/77_2.png) [@schymans](https://renku.discourse.group/u/schymans)
#### Post date: [29 November 2021 12:46 UTC](https://renku.discourse.group/t/renku-run-papermill/493/3 "2021-11-29T12:46:52Z")

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Hi Ralf, sorry about this, I made it ‘internal’ now. Don’t want to make it public yet as I haven’t included any license information.

Here is what I got:

```auto
$ renku log modules_exported/Mathematical_model_variable_definitions.py
* d1aea19e notebooks/GC_Fluxes_Computations_equations.ran.ipynb
| * d1aea19e modules_exported/Mathematical_model_variable_definitions.py
|/
| * d1aea19e modules_exported/Mathematical_model_equations_definitions.py
|/
| * c3cef784 .renku/workflow/759a220028cc426ca49cf2a187b7ad23_papermill.yaml
|/
* aca8c241 (latest -> 55460c5f) notebooks/GC_Fluxes_Computations_equations.ipynb
| (part of notebooks directory)
@ aca8c241 (latest -> 55460c5f) notebooks

```

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<div class="post-metadata">

### Author: ![schymans](https://yyz2.discourse-cdn.com/free1/user_avatar/renku.discourse.group/schymans/32/77_2.png) [@schymans](https://renku.discourse.group/u/schymans)
#### Post date: [29 April 2022 07:13 UTC](https://renku.discourse.group/t/renku-run-papermill/493/4 "2022-04-29T07:13:28Z")

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I just checked the same project again ([Renku](https://renkulab.io/projects/wave/li-6800)), and now it works! The knowledge graph shows up nicely, and when clicking on the input or output filesl in the KG, I get a new view for that file: [Renku](https://renkulab.io/projects/wave/li-6800/files/lineage/notebooks/GC_Fluxes_Computations_equations.ipynb)  
Awesome! The new version of renku made all the difference.  
It would be nice if clicking on the renku run command would also show the full command.